5F6L Protein Binding Transferase date Dec 06, 2015
title The Crystal Structure Of Mll1 (N3861iq3867l) In Complex Wit And Ash2l
authors Y.Li, M.Lei, Y.Chen
compound source
Molecule: Retinoblastoma-Binding Protein 5
Chain: J
Fragment: Unp Residues 330-356
Synonym: Rbbp-5,Retinoblastoma-Binding Protein Rbq-3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp5, Rbq3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b-Sumo

Molecule: Set1ash2 Histone Methyltransferase Complex Subun
Chain: B
Fragment: Unp Residues 380-496, 539-598
Synonym: Ash2-Like Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ash2l, Ash2l1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b-Sumo

Molecule: Histone-Lysine N-Methyltransferase 2a
Chain: A
Fragment: Unp Residues 3813-3969
Synonym: Lysine N-Methyltransferase 2a,All-1,Cxxc-Type Zinc Protein 7,Myeloidlymphoid Or Mixed-Lineage Leukemia,Myeloi Or Mixed-Lineage Leukemia Protein 1,Trithorax-Like Protein, Finger Protein Hrx;
Ec: 2.1.1.43
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kmt2a, All1, Cxxc7, Hrx, Htrx, Mll, Mll1, Trx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b-Sumo
symmetry Space Group: C 1 2 1
R_factor 0.166 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.966 44.410 117.792 90.00 106.16 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SAH, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (5f6l.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 5F6L
  • CSU: Contacts of Structural Units for 5F6L
  • Structure Factors (356 Kb)
  • Retrieve 5F6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F6L from S2C, [Save to disk]
  • Re-refined 5f6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F6L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5f6l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f6l] [5f6l_A] [5f6l_J] [5f6l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5F6L: [PostSET] [SET] [SPRY ] by SMART
  • Other resources with information on 5F6L
  • Community annotation for 5F6L at PDBWiki (http://pdbwiki.org)

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