5F6M	Hydrolase	date	Dec 06, 2015
title	Isotropic Trypsin Model For Comparison Of Diffuse Scattering
authors	A.H.Van Benschoten, M.E.Wall, J.S.Fraser
compound		source
Molecule: Cationic Trypsin Chain: A Synonym: Beta-Trypsin Ec: 3.4.21.4		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913
symmetry	Space Group: P 21 21 21	R_factor 0.145 R_Free 0.155
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.810 58.510 67.420 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.10 Å
ligand	BEN, CA, SO4	enzyme	Hydrolase E.C.3.4.21.4 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Measuring and modeling diffuse scattering in protein X-ray crystallography., Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME, Proc Natl Acad Sci U S A. 2016 Mar 28. pii: 201524048. PMID:27035972

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (5f6m.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 5F6M CSU: Contacts of Structural Units for 5F6M Structure Factors (1564 Kb) Retrieve 5F6M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F6M from S2C, [Save to disk] Re-refined 5f6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5F6M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5F6M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f6m] [5f6m_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5F6M: [Tryp_SPc ] by SMART

Other resources with information on 5F6M

Community annotation for 5F6M at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---