5F71 Immune System date Dec 07, 2015
title Human T-Cell Immunoglobulin And Mucin Domain Protein 3 (Htim
authors G.F.Gao, G.Lu, H.Wang, J.Qi
compound source
Molecule: Hepatitis A Virus Cellular Receptor 2
Chain: A, B
Fragment: Unp Residues 22-130
Synonym: Havcr-2, Havcr2, T-Cell Immunoglobulin And Mucin D Containing Protein 3,Timd-3;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Timd3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.997 61.957 67.152 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand NA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5f71.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (5f71.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5F71
  • CSU: Contacts of Structural Units for 5F71
  • Structure Factors (164 Kb)
  • Retrieve 5F71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F71 from S2C, [Save to disk]
  • Re-refined 5f71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5F71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5F71
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f71_A] [5f71] [5f71_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5F71: [IG ] by SMART
    • Other resources with information on 5F71
  • Community annotation for 5F71 at PDBWiki (http://pdbwiki.org)

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