5F75 Oxidoreductase date Dec 07, 2015
title Thiocyanate Dehydrogenase From Thioalkalivibrio Paradoxus
authors S.I.Tsallagov, K.M.Polyakov, T.V.Tikhonova, A.A.Trofimov, I.G.Sh A.N.Popov, V.O.Popov
compound source
Molecule: Thiocyanate Dehydrogenase
Chain: A, B, C, D
 Organism_scientific: Thioalkalivibrio Thiocyanoxidans
Organism_taxid: 108010
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.780 95.420 107.000 90.00 100.66 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (5f75.pdb1.gz) 152 Kb
  • Biological Unit Coordinates (5f75.pdb2.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 5F75
  • CSU: Contacts of Structural Units for 5F75
  • Structure Factors (2691 Kb)
  • Retrieve 5F75 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F75 from S2C, [Save to disk]
  • Re-refined 5f75 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5F75 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5F75
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f75_A] [5f75_B] [5f75_D] [5f75] [5f75_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5F75
  • Community annotation for 5F75 at PDBWiki (http://pdbwiki.org)

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