5F88 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG, PO4 enzyme
Primary referenceNatural and non-natural amino-acid side-chain substitutions: affinity and diffraction studies of meditope-Fab complexes., Bzymek KP, Avery KA, Ma Y, Horne DA, Williams JC, Acta Crystallogr F Struct Biol Commun. 2016 Nov 1;72(Pt 11):820-830. doi:, 10.1107/S2053230X16016149. Epub 2016 Oct 24. PMID:27834791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (294 Kb) [Save to disk]
  • Biological Unit Coordinates (5f88.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (5f88.pdb2.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 5F88
  • CSU: Contacts of Structural Units for 5F88
  • Structure Factors (346 Kb)
  • Retrieve 5F88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F88 from S2C, [Save to disk]
  • Re-refined 5f88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5F88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f88] [5f88_A] [5f88_B] [5f88_C] [5f88_D] [5f88_E] [5f88_F]
  • SWISS-PROT database:
  • Domains found in 5F88: [IG_like] [IGv ] by SMART

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