OCA Atlas for 5F9F

5F9F

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BU3, ETF, MG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, K, I, E, G, A

Primary reference

Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I., Devarkar SC, Wang C, Miller MT, Ramanathan A, Jiang F, Khan AG, Patel SS, Marcotrigiano J, Proc Natl Acad Sci U S A. 2016 Jan 5. pii: 201515152. PMID:26733676

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1414 Kb) [Save to disk]

Biological Unit Coordinates (5f9f.pdb1.gz) 1401 Kb

LPC: Ligand-Protein Contacts for 5F9F

CSU: Contacts of Structural Units for 5F9F

Structure Factors (3474 Kb)

Retrieve 5F9F in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5F9F from S2C, [Save to disk]

Re-refined 5f9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5F9F in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f9f] [5f9f_A] [5f9f_B] [5f9f_C] [5f9f_D] [5f9f_E] [5f9f_F] [5f9f_G] [5f9f_H] [5f9f_I] [5f9f_J] [5f9f_K] [5f9f_L]

SWISS-PROT database:

Domains found in 5F9F: [AAA] [DEXDc] [HELICc ] by SMART

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