5F9F	Hydrolase Rna	date	Dec 09, 2015
title	Crystal Structure Of Rig-I Helicase-Rd In Complex With 24-Me End Hairpin Rna
authors	C.Wang, J.Marcotrigiano, M.T.Miller, F.Jiang
compound		source
Molecule: Probable Atp-Dependent Rna Helicase Ddx58 Chain: A, C, E, G, I, K Synonym: Dead Box Protein 58,Rig-I-Like Receptor 1,Rlr-1,Re Acid-Inducible Gene 1 Protein,Rig-1,Retinoic Acid-Inducible Protein,Rig-I; Ec: 3.6.4.13 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ddx58 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (5'- R(Gpapapupapupapapupapgpupgpapupapupupap Upc)-3'); Chain: B, D, F, H, J, L Synonym: 5'Oh Hp Rna Engineered: Yes Other_details: 5'Oh Hp Rna		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.203 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.524 174.252 308.288 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	BU3, ETF, MG, ZN	enzyme	Hydrolase E.C.3.6.4.13 BRENDA
Gene Ontology	Chain Function Process Component A, C, K, I, G, E
Primary reference	Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I., Devarkar SC, Wang C, Miller MT, Ramanathan A, Jiang F, Khan AG, Patel SS, Marcotrigiano J, Proc Natl Acad Sci U S A. 2016 Jan 5. pii: 201515152. PMID:26733676

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1414 Kb) [Save to disk] Biological Unit Coordinates (5f9f.pdb1.gz) 1401 Kb LPC: Ligand-Protein Contacts for 5F9F CSU: Contacts of Structural Units for 5F9F Structure Factors (3474 Kb) Retrieve 5F9F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F9F from S2C, [Save to disk] Re-refined 5f9f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5F9F

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f9f_A] [5f9f_C] [5f9f] [5f9f_G] [5f9f_F] [5f9f_K] [5f9f_D] [5f9f_B] [5f9f_E] [5f9f_J] [5f9f_H] [5f9f_I] [5f9f_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5F9F: [AAA] [DEXDc] [HELICc ] by SMART

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