5FAH Hydrolase date Dec 11, 2015
title Kallikrein-7 In Complex With Compound1
authors N.Ostermann, F.Zink
compound source
Molecule: Kallikrein-7
Chain: A
Fragment: Unp Residues 30-253
Synonym: Hk7,Serine Protease 6,Stratum Corneum Chymotryptic Hscce;
Ec: 3.4.21.117
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klk7, Prss6, Scce
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.611 60.343 80.633 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand 5VT, ACT enzyme Hydrolase E.C.3.4.21.117 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSmall-molecule factor D inhibitors targeting the alternative complement pathway., Maibaum J, Liao SM, Vulpetti A, Ostermann N, Randl S, Rudisser S, Lorthiois E, Erbel P, Kinzel B, Kolb FA, Barbieri S, Wagner J, Durand C, Fettis K, Dussauge S, Hughes N, Delgado O, Hommel U, Gould T, Sweeney AM, Gerhartz B, Cumin F, Flohr S, Schubart A, Jaffee B, Harrison R, Risitano AM, Eder J, Anderson K, Nat Chem Biol. 2016 Oct 24. doi: 10.1038/nchembio.2208. PMID:27775713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (5fah.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 5FAH
  • CSU: Contacts of Structural Units for 5FAH
  • Structure Factors (1833 Kb)
  • Retrieve 5FAH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FAH from S2C, [Save to disk]
  • Re-refined 5fah structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FAH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FAH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fah_A] [5fah]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FAH: [Tryp_SPc ] by SMART
    • Other resources with information on 5FAH
  • Community annotation for 5FAH at PDBWiki (http://pdbwiki.org)

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