5FAI Transferase date Dec 11, 2015
title Emg1 N1-Specific Pseudouridine Methyltransferase
authors A.Dong, H.Zeng, Y.Li, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edw P.J.Brown, H.Wu, Structural Genomics Consortium (Sgc)
compound source
Molecule: Ribosomal Rna Small Subunit Methyltransferase Nep
Chain: A
Synonym: 18s Rrna (Pseudouridine(1248)-N1)-Methyltransferas Psi1248 Methyltransferase,Nucleolar Protein Emg1 Homolog,Pr Ribosome Biogenesis Protein Nep1;
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Emg1, C2f
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Codon Plus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 65 2 2
R_factor 0.168 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.118 86.118 125.178 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CIT, SAH, UNX enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (5fai.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 5FAI
  • CSU: Contacts of Structural Units for 5FAI
  • Structure Factors (1484 Kb)
  • Retrieve 5FAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FAI from S2C, [Save to disk]
  • Re-refined 5fai structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FAI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FAI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fai_A] [5fai]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FAI
  • Community annotation for 5FAI at PDBWiki (http://pdbwiki.org)

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