5FAR Lyase date Dec 11, 2015
title Crystal Structure Of Dihydroneopterin Aldolase From Bacillus Complex With 9-Methylguanine
authors C.Chang, N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimia For Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: 7,8-Dihydroneopterin Aldolase
Chain: A, B, C, D, E, F, G, H
Ec: 4.1.2.25
Engineered: Yes
Organism_scientific: Bacillus Cereus Bag3x2-1
Organism_taxid: 1053183
Gene: Ie3_00005
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Magic
Expression_system_plasmid: Pmcsg28
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.795 138.209 63.933 90.00 89.97 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 9MG, MSE enzyme Lyase E.C.4.1.2.25 BRENDA
Gene IE3
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (5far.pdb1.gz) 165 Kb
  • Biological Unit Coordinates (5far.pdb2.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 5FAR
  • CSU: Contacts of Structural Units for 5FAR
  • Structure Factors (1867 Kb)
  • Retrieve 5FAR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FAR from S2C, [Save to disk]
  • Re-refined 5far structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FAR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FAR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5far_F] [5far_H] [5far] [5far_A] [5far_G] [5far_B] [5far_E] [5far_C] [5far_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FAR: [FolB ] by SMART
  • Other resources with information on 5FAR
  • Community annotation for 5FAR at PDBWiki (http://pdbwiki.org)

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