5FD2	Transferase Transferase Inhibitor	date	Dec 15, 2015
title	B-Raf Wild-Type Kinase Domain In Complex With A Purinylpyrid Based Inhibitor
authors	D.A.Whittington, L.F.Epstein
compound		source
Molecule: Serinethreonine-Protein Kinase B-Raf Chain: A, B Fragment: Unp Residues 433-726 Synonym: Proto-Oncogene B-Raf,P94,V-Raf Murine Sarcoma Vira Homolog B1; Ec: 2.7.11.1 Engineered: Yes Other_details: Kinase Domain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_strain: Bti-Tn-5b1-4 Expression_system_vector_type: Pfastbac Dual
symmetry	Space Group: C 2 2 21	R_factor 0.213 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.790 80.088 245.253 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.89 Å
ligand	5XJ	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Purinylpyridinylamino-based DFG-in/alphaC-helix-out B-Raf inhibitors: Applying mutant versus wild-type B-Raf selectivity indices for compound profiling., Liu L, Lee MR, Kim JL, Whittington DA, Bregman H, Hua Z, Lewis RT, Martin MW, Nishimura N, Potashman M, Yang K, Yi S, Vaida KR, Epstein LF, Babij C, Fernando M, Carnahan J, Norman MH, Bioorg Med Chem. 2016 May 15;24(10):2215-34. doi: 10.1016/j.bmc.2016.03.055. Epub, 2016 Apr 13. PMID:27085672

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk] Biological Unit Coordinates (5fd2.pdb1.gz) 169 Kb LPC: Ligand-Protein Contacts for 5FD2 CSU: Contacts of Structural Units for 5FD2 Structure Factors (295 Kb) Retrieve 5FD2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FD2 from S2C, [Save to disk] Re-refined 5fd2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FD2 in 3D

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Visual 3D analysis of 5FD2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fd2_B] [5fd2_A] [5fd2] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5FD2: [STYKc ] by SMART

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