5FEY Ligase date Dec 17, 2015
title Trim32 Ring
authors K.Rittinger, D.Esposito, M.G.Koliopoulos
compound source
Molecule: E3 Ubiquitin-Protein Ligase Trim32
Chain: A, B
Synonym: 72 Kda Tat-Interacting Protein,Tripartite Motif-Co Protein 32,Zinc Finger Protein Ht2a,Trim32-Ring;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim32, Ht2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.248 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.536 54.536 99.120 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.23 Å
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceFunctional role of TRIM E3 ligase oligomerization and regulation of catalytic activity., Koliopoulos MG, Esposito D, Christodoulou E, Taylor IA, Rittinger K, EMBO J. 2016 May 6. pii: e201593741. PMID:27154206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (5fey.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 5FEY
  • CSU: Contacts of Structural Units for 5FEY
  • Structure Factors (163 Kb)
  • Retrieve 5FEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FEY from S2C, [Save to disk]
  • Re-refined 5fey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FEY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fey from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fey_A] [5fey] [5fey_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FEY: [RING ] by SMART
  • Other resources with information on 5FEY
  • Community annotation for 5FEY at PDBWiki (http://pdbwiki.org)

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