5FFO Cell Adhesion date Dec 18, 2015
title Integrin Alpha V Beta 6 In Complex With Pro-Tgf-Beta
authors X.Dong, B.Zhao, T.A.Springer
compound source
Molecule: Integrin Alpha-V
Chain: A, E
Fragment: Unp Residues 31-627
Synonym: Vitronectin Receptor Subunit Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgav, Msk8, Vnra
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Integrin Beta-6
Chain: B, F
Fragment: Unp Residues 128-378
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb6
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transforming Growth Factor Beta-1
Chain: C, D, G, H
Fragment: Unp Residues 34-390
Synonym: Tgf-Beta-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tgfb1, Tgfb
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor 0.224 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.440 91.440 131.030 89.98 86.25 89.85
method X-Ray Diffractionresolution 3.49 Å
ligand BMA, CA, MAN, MN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


F, B


H, C, D, G
  • positive regulation of cellu...
  • positive regulation of colla...
  • cellular response to transfo...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1055 Kb) [Save to disk]
  • Biological Unit Coordinates (5ffo.pdb1.gz) 1036 Kb
  • LPC: Ligand-Protein Contacts for 5FFO
  • CSU: Contacts of Structural Units for 5FFO
  • Structure Factors (387 Kb)
  • Retrieve 5FFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FFO from S2C, [Save to disk]
  • Re-refined 5ffo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FFO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ffo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ffo_D] [5ffo_H] [5ffo_E] [5ffo_C] [5ffo] [5ffo_A] [5ffo_G] [5ffo_B] [5ffo_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FFO
  • Community annotation for 5FFO at PDBWiki (http://pdbwiki.org)

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