5FGD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	3BV, CL, MES, MG	enzyme
Gene Ontology	Chain Function Process Component D, R proteasome core complex, alp... E, S proteasome core complex, alp... J, X endopeptidase activator acti... proteasome core complex, bet... K, H, V, Y O, A proteasome core complex, alp... P, B proteasome core complex, alp... Q, C T, F proteasome core complex, alp... U, G proteasome core complex, alp... W, I endopeptidase activator acti... proteasome core complex, bet... Z, L a, M proteasome core complex, bet... b, N proteasome core complex, bet...
Primary reference	A unified mechanism for proteolysis and autocatalytic activation in the 20S proteasome., Huber EM, Heinemeyer W, Li X, Arendt CS, Hochstrasser M, Groll M, Nat Commun. 2016 Mar 11;7:10900. doi: 10.1038/ncomms10900. PMID:26964885

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2055 Kb) [Save to disk] Biological Unit Coordinates (5fgd.pdb1.gz) 2040 Kb LPC: Ligand-Protein Contacts for 5FGD CSU: Contacts of Structural Units for 5FGD Structure Factors (5390 Kb) Retrieve 5FGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FGD from S2C, [Save to disk] Re-refined 5fgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FGD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fgd_J] [5fgd_K] [5fgd_L] [5fgd] [5fgd_A] [5fgd_B] [5fgd_C] [5fgd_D] [5fgd_E] [5fgd_F] [5fgd_G] [5fgd_H] [5fgd_I] [5fgd_M] [5fgd_N] [5fgd_O] [5fgd_P] [5fgd_Q] [5fgd_R] [5fgd_S] [5fgd_T] [5fgd_U] [5fgd_V] [5fgd_W] [5fgd_X] [5fgd_Y] [5fgd_Z] [5fgd_a] [5fgd_b] SWISS-PROT database: Domain found in 5FGD: [Proteasome_A_N ] by SMART

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