5FJ4	Transcription	date	Oct 06, 2015
title	Structure Of The Standard Kink Turn Hmkt-7 As Stem Loop Boun And L7ae Proteins
authors	L.Huang, D.M.J.Lilley
compound		source
Molecule: U1 Small Nuclear Ribonucleoprotein A Chain: A, B, E, F Fragment: Rrm 1 Domain, Unp Residues 1-102 Synonym: U1 Snrnp A, U1-A, U1a Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Gold Plyss Expression_system_vector_type: Plasmid Expression_system_vector: Pt7
Molecule: 50s Ribosomal Protein L7ae Chain: C, G Fragment: Rna Binding Domain, Unp Residues 5-119 Synonym: Ribosomal Protein L8e, Afl7ae Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 224325 Strain: Dsm 4304 Atcc: 49558 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Gold Plyss Expression_system_vector_type: Plasmid Expression_system_vector: Pet-Duet1
Molecule: Hmkt-7 Chain: D, H Fragment: Kink Turn Motif Engineered: Yes		Synthetic: Yes Organism_scientific: Haloarcula Marismortui Organism_taxid: 2238
symmetry	Space Group: C 2 2 21	R_factor 0.199 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 131.853 161.226 149.899 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.95 Å
Gene Ontology	Chain Function Process Component C, G ribonuclease P activity F, A, E, B
Primary reference	A critical base pair in k-turns determines the conformational class adopted, and correlates with biological function., Huang L, Wang J, Lilley DM, Nucleic Acids Res. 2016 Mar 25. pii: gkw201. PMID:27016741

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk] Biological Unit Coordinates (5fj4.pdb1.gz) 139 Kb Biological Unit Coordinates (5fj4.pdb2.gz) 140 Kb CSU: Contacts of Structural Units for 5FJ4 Structure Factors (1838 Kb) Retrieve 5FJ4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FJ4 from S2C, [Save to disk] Re-refined 5fj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FJ4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FJ4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fj4_G] [5fj4] [5fj4_B] [5fj4_H] [5fj4_F] [5fj4_A] [5fj4_C] [5fj4_D] [5fj4_E] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5FJ4: [RRM ] by SMART

Other resources with information on 5FJ4

Community annotation for 5FJ4 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---