5FJ8 Transcription date Oct 06, 2015
title Cryo-Em Structure Of Yeast Rna Polymerase III Elongation Com A
authors N.A.Hoffmann, A.J.Jakobi, M.Moreno-Morcillo, S.Glatt, J.Kosinski W.J.Hagen, C.Sachse, C.W.Muller
compound source
Molecule: Dna-Directed Rna Polymerase III Subunit Rpc1
Chain: A
Synonym: Rna Polymerase III Subunit C1, Dna-Directed Rna Po III Largest Subunit, Rna Polymerase III Subunit C160, Rna P III;
Ec: 2.7.7.6
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc2
Chain: B
Synonym: Rna Polymerase III Subunit C2, C128, Dna-Directed Polymerase III 130 Kda Polypeptide, Rna Polymerase III;
Ec: 2.7.7.6
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I And III Subunit Rp
Chain: C
Synonym: Rna Polymerases I And III Subunit Ac1, C37, Dna-Di Polymerases I And III 40 Kda Polypeptide, Ac40, C40, Rna Po III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc9
Chain: D
Synonym: Rna Polymerase III Subunit C9, Rna Polymerase III 17, Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 1;
Chain: E
Synonym: Rna Polymerases I, II, And III Subunit Abc1, Abc27 Directed Rna Polymerases I, II, And III 27 Kda Polypeptide, Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: F
Synonym: Rna Polymerases I, II, And III Subunit Abc2, Abc23 Directed Rna Polymerases I, II, And III 23 Kda Polypeptide, Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc8
Chain: G
Synonym: Rna Polymerase III Subunit C8, Dna-Directed Rna Po III 25 Kda Polypeptide, Rna Polymerase III Subunit C25, Rna Polymeraswe Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 3;
Chain: H
Synonym: Rna Polymerases I, II, And III Subunit Abc3, Abc14 .5, Dna-Directed Rna Polymerases I, II, And III 14.5 Kda Po Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc10
Chain: I
Synonym: Rna Polymerase III Subunit C10, Dna-Directed Rna P S III 12.5 Kda Polypeptide, Rna Polymerase III Subunit C11, Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 5;
Chain: J
Synonym: Rna Polymerases I, II, And III Subunit Abc5, Abc10 C8, Dna-Directed Rna Polymerases I, II, And III 8.3 Kda Pol Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I And III Subunit Rp
Chain: K
Synonym: Rna Polymerases I And III Subunit Ac2, Ac19, Dna-D Rna Polymerases I And III 16 Kda Polypeptide, Rpa19, Rna Po III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 4;
Chain: L
Synonym: Rna Polymerases I, II, And III Subunit Abc4, Abc10 Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc5
Chain: M
Synonym: Rna Polymerase III Subunit C5, Dna-Directed Rna Po III 37 Kda Polypeptide, Rna Polymerase III Subunit C37, Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc4
Chain: N
Synonym: Rna Polymerase III Subunit C4, C53, Dna-Directed R Polymerase III 47 Kda Polypeptide, Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc3
Chain: O
Synonym: Rna Polymerase III Subunit C3, C82, Dna-Directed I Polypeptide, C74, Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc6
Chain: P
Synonym: Rna Polymerase III Subunit C6, C34, Dna-Directed R Polymerase III 36 Kda Polypeptide, Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc7
Chain: Q
Synonym: Rna Polymerase III Subunit C7, Dna-Directed Rna Po III 31 Kda Polypeptide, C31, Rna Polymerase III;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Rna
Chain: R
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Non-Template Dna
Chain: S
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Template Dna
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E
  • RNA-directed 5'-3' RNA polym...


    • F
  • RNA-directed 5'-3' RNA polym...


    • G


    H
  • RNA-directed 5'-3' RNA polym...


    • I


    J
  • RNA-directed 5'-3' RNA polym...

  • DNA-directed RNA polymerase ...
    • K


    L
  • RNA-directed 5'-3' RNA polym...


    • M


    N


    O


    P


    Q


    Primary referenceMolecular structures of unbound and transcribing RNA polymerase III., Hoffmann NA, Jakobi AJ, Moreno-Morcillo M, Glatt S, Kosinski J, Hagen WJ, Sachse C, Muller CW, Nature. 2015 Nov 25. doi: 10.1038/nature16143. PMID:26605533
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (796 Kb) [Save to disk]
  • Biological Unit Coordinates (5fj8.pdb1.gz) 784 Kb
  • LPC: Ligand-Protein Contacts for 5FJ8
  • CSU: Contacts of Structural Units for 5FJ8
  • Retrieve 5FJ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FJ8 from S2C, [Save to disk]
    • View 5FJ8 in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FJ8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fj8_C] [5fj8_N] [5fj8_M] [5fj8_R] [5fj8_H] [5fj8_E] [5fj8_O] [5fj8_K] [5fj8_I] [5fj8_B] [5fj8_A] [5fj8] [5fj8_J] [5fj8_Q] [5fj8_L] [5fj8_G] [5fj8_D] [5fj8_P] [5fj8_F] [5fj8_T] [5fj8_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FJ8: [RNA_pol_Rpb6] [RPOL4c] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [ZnF_C2C2 ] by SMART
    • Other resources with information on 5FJ8
  • Community annotation for 5FJ8 at PDBWiki (http://pdbwiki.org)

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