5FLG Ligase date Oct 26, 2015
title Crystal Structure Of The 6-Carboxyhexanoate-Coa Ligase (Biow Bacillus Subtilis In Complex With Amppnp
authors L.Moynie, M.Wang, D.J.Campopiano, J.H.Naismith
compound source
Molecule: 6-Carboxyhexanoate--Coa Ligase
Chain: A, B
Synonym: Pimeloyl-Coa Synthase
Ec: 6.2.1.14
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.590 77.900 166.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand ANP, MG, PML enzyme Ligase E.C.6.2.1.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceUsing the pimeloyl-CoA synthetase adenylation fold to synthesize fatty acid thioesters., Wang M, Moynie L, Harrison PJ, Kelly V, Piper A, Naismith JH, Campopiano DJ, Nat Chem Biol. 2017 Apr 17. doi: 10.1038/nchembio.2361. PMID:28414710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5flg.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5FLG
  • CSU: Contacts of Structural Units for 5FLG
  • Structure Factors (2184 Kb)
  • Retrieve 5FLG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FLG from S2C, [Save to disk]
  • Re-refined 5flg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FLG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FLG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5flg_B] [5flg] [5flg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5FLG
  • Community annotation for 5FLG at PDBWiki (http://pdbwiki.org)

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