5FLX | Ribosome | date | Oct 28, 2015 |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
title | Mammalian 40s Hcv-Ires Complex | ||||||||||||||
authors | H.Yamamoto, M.Collier, J.Loerke, J.Ismer, A.Schmidt, T.Hilal, T.Sp K.Yamamoto, T.Mielke, J.Burger, T.R.Shaikh, M.Dabrowski, P.W.Hil P.Scheerer, C.M.T.Spahn | ||||||||||||||
compound | source | ||||||||||||||
Molecule: 18s Rrna Chain: 1 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein Sa Chain: A Synonym: 37 Kda Laminin Receptor Precursor, 37lrp, 3767 Kd Receptor, Lrplr, 67 Kda Laminin Receptor, 67lr, Colon Carc Laminin-Binding Protein, Laminin Receptor 1,Lamr, Laminin-B Protein Precursor P40,Lbpp40,Multidrug Resistance-Associat Mgr1-Ag, Nem1chd4,40s Ribosomal Protein Us2; |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S3a Chain: B Synonym: V-Fos Transformation Effector Protein, Fte-1,40s R Protein Es1; |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S2 Chain: C Synonym: 40s Ribosomal Protein S4,Protein Llrep3,40s Riboso Protein Us5; |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S3 Chain: D Synonym: 40s Ribosomal Protein Us3 Ec: 4.2.99.18 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S4, Y Isoform 1 Chain: E Synonym: 40s Ribosomal Protein Es4 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S5 Chain: F Synonym: 40s Ribosomal Protein Us7 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S6 Chain: G Synonym: Phosphoprotein Np33,40s Ribosomal Protein Es6 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S7 Chain: H Synonym: 40s Ribosomal Protein Es7 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S8 Chain: I Synonym: 40s Ribosomal Protein Es8 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S9 Chain: J Synonym: 40s Ribosomal Protein Us4 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S10 Chain: K Synonym: 40s Ribosomal Protein Es10 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S11 Chain: L Synonym: 40s Ribosomal Protein Us17 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S12 Chain: M Synonym: 40s Ribosomal Protein Es12 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S13 Chain: N Synonym: 40s Ribosomal Protein Us15 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S14 Chain: O Synonym: 40s Ribosomal Protein Us11 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S15 Chain: P Synonym: Rig Protein, 40s Ribosomal Protein Us19 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S16 Chain: Q Synonym: 40s Ribosomal Protein Us9 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S17 Chain: R Synonym: 40s Ribosomal Protein Es17 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S18 Chain: S Synonym: Ke-3,Ke3,40s Ribosomal Protein Us13 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S19 Chain: T Synonym: 40s Ribosomal Protein Es19 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S20 Chain: U Synonym: 40s Ribosomal Protein Us10 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S21 Chain: V Synonym: 40s Ribosomal Protein Es21 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S15a Chain: W Synonym: 40s Ribosomal Protein Us8 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S23 Chain: X Synonym: 40s Ribosomal Protein Us12 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S24 Chain: Y Synonym: 40s Ribosomal Protein Es24 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S25 Chain: Z Synonym: 40s Ribosomal Protein Es25 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S26 Chain: a Synonym: 40s Ribosomal Protein Es26 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S27 Chain: b Synonym: Metallopan-Stimulin 1,Mps-1,40s Ribosomal Protein |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S28 Chain: c Synonym: 40s Ribosomal Protein Es28 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S29 Chain: d Synonym: 40s Ribosomal Protein Us14 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: 40s Ribosomal Protein S30 Chain: e Synonym: 40s Ribosomal Protein Es30 |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: Ubiquitin-40s Ribosomal Protein S27a Chain: f Synonym: Ubiquitin Carboxyl Extension Protein 80,40s Riboso Protein Es31; |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: Guanine Nucleotide-Binding Protein Subunit Beta-2 Chain: g Synonym: Cell Proliferation-Inducing Gene 21 Protein, Guani Nucleotide-Binding Protein Subunit Beta-Like Protein 12.3,H Cancer Oncogene 7 Protein, Hlc-7,Receptor For Activated C K Receptor Of Activated Protein Kinase C 1,Rack1,40s Ribosoma Rack1; |
Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 | ||||||||||||||
Molecule: Hcv-Ires Chain: z Engineered: Yes |
Organism_scientific: Hepatitis C Virus Organism_common: Hcv Organism_taxid: 11103 Expression_system: Oryctolagus Cuniculus Expression_system_common: Rabbit Expression_system_taxid: 9986 | ||||||||||||||
symmetry | Space Group: P 1 |
| |||||||||||||
crystal cell |
| ||||||||||||||
method | Electron Microscopy | resolution | 3.90 Å | ||||||||||||
ligand | MG, ZN | enzyme | Lyase E.C.4.2.99.18 BRENDA | ||||||||||||
Gene Ontology | |||||||||||||||
Primary reference | Molecular architecture of the ribosome-bound Hepatitis C Virus internal ribosomal entry site RNA., Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Burger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CM, EMBO J. 2015 Dec 14;34(24):3042-58. doi: 10.15252/embj.201592469. Epub 2015 Nov, 24. PMID:26604301 |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |