5FMF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
1


2


A
  • RNA-directed 5'-3' RNA polym...


    • B
  • RNA-directed 5'-3' RNA polym...


    • C


    D


    E
  • RNA-directed 5'-3' RNA polym...


    • F


    G
  • RNA-directed 5'-3' RNA polym...


    • H
  • RNA-directed 5'-3' RNA polym...


    • I
  • RNA-directed 5'-3' RNA polym...


    • J
  • RNA-directed 5'-3' RNA polym...

  • DNA-directed RNA polymerase ...
    • K
  • RNA-directed 5'-3' RNA polym...


    • L


    M


    O


    P


    Q


    R


    S


    U


    V


    W


    X


    Y


    Primary referenceStructure of an RNA polymerase II preinitiation complex., Murakami K, Tsai KL, Kalisman N, Bushnell DA, Asturias FJ, Kornberg RD, Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13543-8. doi:, 10.1073/pnas.1518255112. Epub 2015 Oct 19. PMID:26483468
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (948 Kb) [Save to disk]
  • Biological Unit Coordinates (5fmf.pdb1.gz) 934 Kb
  • LPC: Ligand-Protein Contacts for 5FMF
  • CSU: Contacts of Structural Units for 5FMF
  • Retrieve 5FMF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FMF from S2C, [Save to disk]
    • View 5FMF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fmf] [5fmf_1] [5fmf_2] [5fmf_A] [5fmf_B] [5fmf_C] [5fmf_D] [5fmf_E] [5fmf_F] [5fmf_G] [5fmf_H] [5fmf_I] [5fmf_J] [5fmf_K] [5fmf_L] [5fmf_M] [5fmf_N] [5fmf_O] [5fmf_P] [5fmf_Q] [5fmf_R] [5fmf_S] [5fmf_T] [5fmf_U] [5fmf_V] [5fmf_W] [5fmf_X] [5fmf_Y]
  • SWISS-PROT database:
  • Domains found in 5FMF: [CYCLIN] [DEXDc] [DEXDc2] [HELICc] [HELICc2] [RNA_pol_Rpb6] [RPOL4c] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [S1] [TFIIA] [TFIIE] [TFS2M] [Tbf5] [ZnF_C2C2 ] by SMART

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