5FMW Structural Protein date Nov 10, 2015
title The Poly-C9 Component Of The Complement Membrane Attack Comp
authors N.V.Dudkina, B.A.Spicer, C.F.Reboul, P.J.Conroy, N.Lukoyanova, H. R.H.P.Law, S.M.Ekkel, S.C.Kondos, R.J.A.Goode, G.Ramm, J.C.Whiss H.R.Saibil, M.A.Dunstone
compound source
Molecule: Polyc9
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.70 Å
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U


Primary referenceStructure of the poly-C9 component of the complement membrane attack complex., Dudkina NV, Spicer BA, Reboul CF, Conroy PJ, Lukoyanova N, Elmlund H, Law RH, Ekkel SM, Kondos SC, Goode RJ, Ramm G, Whisstock JC, Saibil HR, Dunstone MA, Nat Commun. 2016 Feb 4;7:10588. doi: 10.1038/ncomms10588. PMID:26841934
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (5fmw.pdb1.gz) 197 Kb
  • CSU: Contacts of Structural Units for 5FMW
  • Retrieve 5FMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FMW from S2C, [Save to disk]
  • View 5FMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FMW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fmw_D] [5fmw_H] [5fmw_L] [5fmw] [5fmw_S] [5fmw_N] [5fmw_C] [5fmw_P] [5fmw_K] [5fmw_A] [5fmw_I] [5fmw_G] [5fmw_O] [5fmw_R] [5fmw_U] [5fmw_M] [5fmw_T] [5fmw_V] [5fmw_J] [5fmw_E] [5fmw_Q] [5fmw_F] [5fmw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FMW: [LDLa] [MACPF] [TSP1 ] by SMART
  • Other resources with information on 5FMW
  • Community annotation for 5FMW at PDBWiki (http://pdbwiki.org)

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