5FN6 Hydrolase date Nov 10, 2015
title Crystal Structure Of Human Cd45 Extracellular Region, Domain
authors V.T.Chang, R.A.Fernandes, K.A.Ganzinger, S.F.Lee, C.Siebold, J.Mc P.Jonsson, M.Palayret, K.Harlos, C.H.Coles, E.Y.Jones, Y.Lui, E.H R.J.C.Gilbert, D.Klenerman, A.R.Aricescu, S.J.Davis
compound source
Molecule: Receptor-Type Tyrosine-Protein Phosphatase C
Chain: A
Fragment: Domains D1-D3, Residues 223-479
Synonym: Leukocyte Common Antigen, L-Ca, T200, Cd45
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: H 3
R_factor 0.209 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.384 132.384 58.099 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand NAG enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInitiation of T cell signaling by CD45 segregation at 'close contacts'., Chang VT, Fernandes RA, Ganzinger KA, Lee SF, Siebold C, McColl J, Jonsson P, Palayret M, Harlos K, Coles CH, Jones EY, Lui Y, Huang E, Gilbert RJ, Klenerman D, Aricescu AR, Davis SJ, Nat Immunol. 2016 May;17(5):574-82. doi: 10.1038/ni.3392. Epub 2016 Mar 21. PMID:26998761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5fn6.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5FN6
  • CSU: Contacts of Structural Units for 5FN6
  • Structure Factors (97 Kb)
  • Retrieve 5FN6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FN6 from S2C, [Save to disk]
  • Re-refined 5fn6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FN6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FN6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fn6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fn6_A] [5fn6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FN6: [FN3 ] by SMART
  • Other resources with information on 5FN6
  • Community annotation for 5FN6 at PDBWiki (http://pdbwiki.org)

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