5FOR Cell Cycle date Nov 25, 2015
title Cryptic Tir
authors S.Halabi, N.J.Gay, M.C.Moncrieffe
compound source
Molecule: Phosphoinositide 3-Kinase Adapter Protein 1
Chain: A
Fragment: Tir Domain, Residues 7-142
Synonym: B-Cell Adapter For Phosphoinositide 3-Kinase, B-Ce Phosphoinositide 3-Kinase Adapter Protein 1, B Cell Adaptor Phosphoinositide 3-Kinase, Bcap;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 62 2 2
R_factor 0.188 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.042 135.042 42.912 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand 1PE, I3C, MLY enzyme
Primary referenceStructure of the TIR domain of BCAP which links phosphoinositide metabolism with the negative regulation of the TLR signalosome., Halabi S, Sekine E, Verstack B, Gay NJ, Moncrieffe MC, J Biol Chem. 2016 Dec 1. pii: jbc.M116.761528. PMID:27909057
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5for.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5FOR
  • CSU: Contacts of Structural Units for 5FOR
  • Structure Factors (442 Kb)
  • Retrieve 5FOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FOR from S2C, [Save to disk]
  • Re-refined 5for structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FOR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5for from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5for_A] [5for]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FOR
  • Community annotation for 5FOR at PDBWiki (http://pdbwiki.org)

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