5FQ5 Hydrolase Dna date Dec 07, 2015
title Crystal Structure Of Cas9-Sgrna-Dna Complex Solved By Native Phasing
authors V.Olieric, T.Weinert, A.Finke, C.Anders, M.Jinek, M.Wang
compound source
Molecule: Sgrna
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Crispr-Associated Endonuclease Cas9csn1
Chain: B
Synonym: Spycas9
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Streptococcus Pyogenes
Organism_taxid: 1314
Gene: Cas9, Csn1, Spy_1046
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pec-K-Mbp

Molecule: Target Dna Strand Proximal Fragment
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Non-Target Dna Strand
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Target Dna Strand Distal Fragment
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.191 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
177.740 67.570 188.190 90.00 111.31 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand K, MG enzyme Hydrolase E.C.3.1 BRENDA
Gene SPY
Gene
Ontology
ChainFunctionProcessComponent
B
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (832 Kb) [Save to disk]
  • Biological Unit Coordinates (5fq5.pdb1.gz) 819 Kb
  • LPC: Ligand-Protein Contacts for 5FQ5
  • CSU: Contacts of Structural Units for 5FQ5
  • Structure Factors (1657 Kb)
  • Retrieve 5FQ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FQ5 from S2C, [Save to disk]
  • Re-refined 5fq5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FQ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FQ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fq5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fq5] [5fq5_A] [5fq5_E] [5fq5_D] [5fq5_C] [5fq5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FQ5
  • Community annotation for 5FQ5 at PDBWiki (http://pdbwiki.org)

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