5FS6 Oxidoreductase date Dec 30, 2015
title Crystal Structure Of The V243l Mutant Of Human Apoptosis Ind Factor
authors I.Sevrioukova
compound source
Molecule: Apoptosis-Inducing Factor 1, Mitochondrial
Chain: A, B
Fragment: Catalytic Domain, Residues 103-613
Synonym: Programmed Cell Death Protein 8, Apoptosis Inducin
Ec: 1.1.1.-
Engineered: Yes
Mutation: Yes
Other_details: Residues 522-558 In Chain A And 523-558 In C Disordered. Both Chains Have Additional C-Terminal Residues V615-P616-R617, Part Of The Thrombin Cleavage Site. Residue Are Disordered In Chain B.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pkk233-3
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.840 114.380 121.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FAD, TRS enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure/Function Relations in AIFM1 Variants Associated with Neurodegenerative Disorders., Sevrioukova IF, J Mol Biol. 2016 May 10. pii: S0022-2836(16)30141-3. doi:, 10.1016/j.jmb.2016.05.004. PMID:27178839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • Biological Unit Coordinates (5fs6.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (5fs6.pdb2.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 5FS6
  • CSU: Contacts of Structural Units for 5FS6
  • Structure Factors (1854 Kb)
  • Retrieve 5FS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FS6 from S2C, [Save to disk]
  • Re-refined 5fs6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FS6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fs6_A] [5fs6_B] [5fs6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FS6: [AIF_C ] by SMART
  • Other resources with information on 5FS6
  • Community annotation for 5FS6 at PDBWiki (http://pdbwiki.org)

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