5FTA Transferase date Jan 12, 2016
title Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd
authors D.M.Pinkas, C.E.Sanvitale, N.Solcan, S.Goubin, C.Tallant, J.A.New J.Kopec, F.Fitzpatrick, R.Talon, P.Collins, T.Krojer, F.Von Delf C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock
compound source
Molecule: Btbpoz Domain-Containing Adapter For Cul3-Mediat Degradation Protein 3;
Chain: A, B, C, D
Fragment: Btb Domain, Unp Residues 26-135
Synonym: Hbacurd3, Btbpoz Domain-Containing Protein Kctd10 Potassium Channel Tetramerization Domain-Containing Protein Kctd10;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.150 83.660 58.680 90.00 95.18 90.00
method X-Ray Diffractionresolution 2.64 Å
ligand HG enzyme
note 5FTA supersedes 4UES
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural complexity in the KCTD family of Cullin3-dependent E3 ubiquitin ligases., Pinkas DM, Sanvitale CE, Bufton JC, Sorrell FJ, Solcan N, Chalk R, Doutch J, Bullock AN, Biochem J. 2017 Nov 1;474(22):3747-3761. doi: 10.1042/BCJ20170527. PMID:28963344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (5fta.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5FTA
  • CSU: Contacts of Structural Units for 5FTA
  • Structure Factors (738 Kb)
  • Retrieve 5FTA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FTA from S2C, [Save to disk]
  • Re-refined 5fta structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FTA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FTA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fta from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fta_B] [5fta_C] [5fta] [5fta_A] [5fta_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FTA: [BTB ] by SMART
  • Other resources with information on 5FTA
  • Community annotation for 5FTA at PDBWiki (http://pdbwiki.org)

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