5FU7 Gene Regulation date Jan 21, 2016
title Drosophila Nanos Nbr Peptide Bound To The Not Module Of The Human Ccr4-Not Complex
authors T.Raisch, D.Bhandari, K.Sabath, S.Helms, E.Valkov, O.Weichenriede E.Izaurralde
compound source
Molecule: Ccr4-Not Transcription Complex Subunit 1
Chain: A, E
Fragment: Not1 Superfamily Homology Domain, Residues 1833-
Synonym: Ccr4-Associated Factor 1, Negative Regulator Of Transcription Subunit 1 Homolog, Not1h, Hnot1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn(Pnyc)

Molecule: Ccr4-Not Transcription Complex Subunit 2
Chain: B, F
Fragment: Not Anchor Region And Not-Box Domain, Residues 35
Synonym: Ccr4-Associated Factor 2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn(Pnea)

Molecule: Ccr4-Not Transcription Complex Subunit 3
Chain: C, G
Fragment: Not Anchor Region And Not-Box Domain, Residues 60
Synonym: Ccr4-Associated Factor 3, Leukocyte Receptor Clust Member 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn(Pnea)

Molecule: Nanos, Isoform B
Chain: D, H
Fragment: Not Module Binding Region (Nbr), Residues 116-163
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcn(Pnea)
symmetry Space Group: P 1 21 1
R_factor 0.1649 R_Free 0.2267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.950 135.670 104.970 90.00 107.98 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E


F, C, G, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (631 Kb) [Save to disk]
  • Biological Unit Coordinates (5fu7.pdb1.gz) 315 Kb
  • Biological Unit Coordinates (5fu7.pdb2.gz) 312 Kb
  • CSU: Contacts of Structural Units for 5FU7
  • Structure Factors (329 Kb)
  • Retrieve 5FU7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FU7 from S2C, [Save to disk]
  • Re-refined 5fu7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FU7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FU7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fu7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fu7_B] [5fu7_E] [5fu7_C] [5fu7_G] [5fu7_D] [5fu7_H] [5fu7_A] [5fu7] [5fu7_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FU7
  • Community annotation for 5FU7 at PDBWiki (http://pdbwiki.org)

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