OCA Atlas for 5FUG

5FUG

Dna Binding Protein

date

Jan 27, 2016

title

Crystal Structure Of A Human Yl1-H2a.Z-H2b Complex

authors

C.M.Latrick, M.Marek, K.Ouararhni, C.Papin, I.Stoll, M.Ignatyeva, E.Ennifar, S.Dimitrov, C.Romier, A.Hamiche

compound

source

Molecule: Histone H2a.Z
Chain: A, D, G, J
Fragment: Globular Domain
Synonym: H2az, Histone Variant H2a.Z
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet-Mcn
Expression_system_plasmid: Pncs

Molecule: Histone H2b Type 1-J
Chain: B, E, H, K
Fragment: Globular Domain
Synonym: Histone H2b.1, Histone H2b.R, H2br, Histone H2b
Engineered: Yes

Molecule: Vacuolar Protein Sorting-Associated Protein 72 Ho
Chain: C, F, I, L
Fragment: N-Terminal Domain
Synonym: Protein Yl-1, Transcription Factor-Like 1, Histone E Yl1;
Engineered: Yes

symmetry

Space Group: P 1 21 1

R_factor

0.177

R_Free

0.243

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
36.120	150.680	92.610	90.00	91.47	90.00

method

X-Ray Diffraction

resolution

2.70 Å

Gene
Ontology

Chain	Function	Process	Component
A, J, D, G
F, C, I, L
K, E, B, H

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]

Biological Unit Coordinates (5fug.pdb1.gz) 74 Kb

Biological Unit Coordinates (5fug.pdb2.gz) 77 Kb

Biological Unit Coordinates (5fug.pdb3.gz) 75 Kb

Biological Unit Coordinates (5fug.pdb4.gz) 76 Kb

CSU: Contacts of Structural Units for 5FUG

Structure Factors (350 Kb)

Retrieve 5FUG in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5FUG from S2C, [Save to disk]

Re-refined 5fug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FUG in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FUG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fug_C] [5fug_E] [5fug_J] [5fug_B] [5fug] [5fug_F] [5fug_I] [5fug_L] [5fug_G] [5fug_D] [5fug_A] [5fug_H] [5fug_K]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 5FUG: [H2A] [H2B ] by SMART

Other resources with information on 5FUG

Community annotation for 5FUG at PDBWiki (http://pdbwiki.org)

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