5FUR Transcription date Jan 29, 2016
title Structure Of Human Tfiid-Iia Bound To Core Promoter Dna
authors R.K.Louder, Y.He, J.R.Lopez-Blanco, J.Fang, P.Chacon, E.Nogales
compound source
Molecule: Tata-Box-Binding Protein
Chain: A
Synonym: Tata Sequence-Binding Protein, Tata-Binding Factor Factor, Transcription Initiation Factor Tfiid Tbp Subunit;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Transcription Initiation Factor Iia Subunit 1
Chain: B
Synonym: General Transcription Factor Iia Subunit 1, Tfiial Transcription Initiation Factor Tfiia 42 Kda Subunit, Tfiia

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Transcription Initiation Factor Iia Subunit 1
Chain: C
Synonym: General Transcription Factor Iia Subunit 1, Tfiial Transcription Initiation Factor Tfiia 42 Kda Subunit, Tfiia

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Transcription Initiation Factor Iia Subunit 2
Chain: D
Synonym: General Transcription Factor Iia Subunit 2, Tfiia Subunit, Tfiias, Transcription Initiation Factor Iia Gamma Tfiia- Gamma;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Super Core Promoter
Chain: E
Fragment: Nontemplate Strand
Other_details: A Composite Sequence Combining Several Promo From Humans A;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Super Core Promoter
Chain: F
Fragment: Template Strand
Other_details: A Composite Sequence Combining Several Promo From Humans A;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Transcription Initiation Factor Tfiid Subunit 1
Chain: G
Synonym: Cell Cycle Gene 1 Protein, Tbp-Associated Factor 2 P250, Transcription Initiation Factor Tfiid 250 Kda Subunit Tafii250;
Ec: 2.3.1.48, 2.7.11.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Transcription Initiation Factor Tfiid Subunit 7
Chain: H
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit F, Transcription Initiation Factor Tfiid 55 Kda Subunit, Tafii

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Transcription Initiation Factor Tfiid Subunit 2
Chain: I
Synonym: 150 Kda Cofactor Of Initiator Function, Rna Polyme Tbp-Associated Factor Subunit B, Tbp-Associated Factor 150 Transcription Initiation Factor Tfiid 150 Kda Subunit, Tafi

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Transcription Initiation Factor Tfiid Subunit 6
Chain: J, K
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E, Transcription Initiation Factor Tfiid 70 Kda Subunit, Tafii Transcription Initiation Factor Tfiid 80 Kda Subunit, Tafii

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Transcription Initiation Factor Tfiid Subunit 8
Chain: L
Synonym: Protein Taube Nuss, Tbp-Associated Factor 43 Kda, Associated Factor 8, Transcription Initiation Factor Tfiid Subunit, Htafii43

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.50 Å
ligand SEP, TPO enzyme Transferase E.C.2.3.1.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A

  • transcription factor TFIID c...
  • B


    C


    D


    G
  • histone acetyltransferase ac...


  • H


    I

  • transcription factor TFIID c...
  • J, K


    L

  • transcription factor TFIID c...
  • Primary referenceStructure of promoter-bound TFIID and model of human pre-initiation complex assembly., Louder RK, He Y, Lopez-Blanco JR, Fang J, Chacon P, Nogales E, Nature. 2016 Mar 31;531(7596):604-9. doi: 10.1038/nature17394. Epub 2016 Mar 23. PMID:27007846
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (396 Kb) [Save to disk]
  • Biological Unit Coordinates (5fur.pdb1.gz) 373 Kb
  • LPC: Ligand-Protein Contacts for 5FUR
  • CSU: Contacts of Structural Units for 5FUR
  • Retrieve 5FUR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FUR from S2C, [Save to disk]
  • View 5FUR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FUR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fur from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fur_A] [5fur_K] [5fur_F] [5fur_G] [5fur_L] [5fur_J] [5fur_H] [5fur_D] [5fur_B] [5fur_E] [5fur_C] [5fur] [5fur_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FUR: [BROMO] [BTP] [TAF] [TAFII55_N ] by SMART
  • Other resources with information on 5FUR
  • Community annotation for 5FUR at PDBWiki (http://pdbwiki.org)

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