5FWK Signaling Protein date Feb 17, 2016
title Atomic Cryoem Structure Of Hsp90-Cdc37-Cdk4 Complex
authors K.A.Verba, R.Y.R.Wang, A.Arakawa, Y.Liu, S.Yokoyama, D.A.Agard
compound source
Molecule: Heat Shock Protein Hsp 90 Beta
Chain: A, B
Fragment: Full Length
Engineered: Yes
Other_details: Atp
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbacht

Molecule: Hsp90 Co-Chaperone Cdc37
Chain: E
Fragment: Full Length
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbacht

Molecule: Cyclin-Dependent Kinase 4
Chain: K
Fragment: Full Length
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbacht
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ATP, MG, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • positive regulation of cycli...

  • E


    K
  • cyclin-dependent protein ser...


  • Primary referenceAtomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase., Verba KA, Wang RY, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA, Science. 2016 Jun 24;352(6293):1542-7. doi: 10.1126/science.aaf5023. PMID:27339980
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (524 Kb) [Save to disk]
  • Biological Unit Coordinates (5fwk.pdb1.gz) 516 Kb
  • LPC: Ligand-Protein Contacts for 5FWK
  • CSU: Contacts of Structural Units for 5FWK
  • Retrieve 5FWK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FWK from S2C, [Save to disk]
  • View 5FWK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FWK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fwk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fwk] [5fwk_B] [5fwk_K] [5fwk_A] [5fwk_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FWK: [CDC37_C] [CDC37_M] [CDC37_N] [HATPase_c] [S_TKc ] by SMART
  • Other resources with information on 5FWK
  • Community annotation for 5FWK at PDBWiki (http://pdbwiki.org)

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