5FWV Signaling Protein date Feb 21, 2016
title Wnt Modulator Kremen Crystal Form III At 3.2a
authors M.Zebisch, V.A.Jackson, E.Y.Jones
compound source
Molecule: Kremen Protein 1
Chain: A
Fragment: Ecd, Residues 29-373
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: P 41 21 2
R_factor 0.19549 R_Free 0.26484
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.844 67.844 198.193 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand CL, NAG enzyme
Primary referenceStructure of the Dual-Mode Wnt Regulator Kremen1 and Insight into Ternary Complex Formation with LRP6 and Dickkopf., Zebisch M, Jackson VA, Zhao Y, Jones EY, Structure. 2016 Sep 6;24(9):1599-1605. doi: 10.1016/j.str.2016.06.020. Epub 2016 , Aug 11. PMID:27524201
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (5fwv.pdb1.gz) 198 Kb
  • LPC: Ligand-Protein Contacts for 5FWV
  • CSU: Contacts of Structural Units for 5FWV
  • Structure Factors (155 Kb)
  • Retrieve 5FWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FWV from S2C, [Save to disk]
  • Re-refined 5fwv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FWV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fwv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fwv] [5fwv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FWV: [CUB] [KR] [WSC ] by SMART
  • Other resources with information on 5FWV
  • Community annotation for 5FWV at PDBWiki (http://pdbwiki.org)

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