5FXU Viral Protein date Mar 02, 2016
title Crystal Structure Of Puumala Virus Gn Glycoprotein Ectodomai
authors S.Li, I.Rissanen, A.Zeltina, J.Hepojoki, J.Raghwani, K.Harlos, O.G J.T.Huiskonen, T.A.Bowden
compound source
Molecule: Envelope Polyprotein
Chain: A, B
Fragment: Ectodomain, Unp Residues 29-383
Synonym: M Polyprotein, Puumala Virus Gn
Engineered: Yes
Other_details: N-Acetylglucosamine Linkages Observed In Str N142 And N357
Organism_scientific: Puumala Orthohantavirus
Organism_taxid: 1980486
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
Expression_system_plasmid: Phlsec
Other_details: Synthetically Optimized Cdna
symmetry Space Group: P 1
R_factor 0.189 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.570 66.790 77.350 107.30 93.55 100.94
method X-Ray Diffractionresolution 2.28 Å
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Molecular-Level Account of the Antigenic Hantaviral Surface., Li S, Rissanen I, Zeltina A, Hepojoki J, Raghwani J, Harlos K, Pybus OG, Huiskonen JT, Bowden TA, Cell Rep. 2016 May 3;15(5):959-67. doi: 10.1016/j.celrep.2016.03.082. Epub 2016, Apr 21. PMID:27117403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (5fxu.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (5fxu.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 5FXU
  • CSU: Contacts of Structural Units for 5FXU
  • Structure Factors (627 Kb)
  • Retrieve 5FXU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FXU from S2C, [Save to disk]
  • Re-refined 5fxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FXU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fxu_B] [5fxu_A] [5fxu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FXU
  • Community annotation for 5FXU at PDBWiki (http://pdbwiki.org)

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