5FXY Transcription date Mar 03, 2016
title Structure Of The Human Rbbp4:Mta1(464-546) Complex
authors C.J.Millard, N.Varma, L.Fairall, J.W.R.Schwabe
compound source
Molecule: Histone-Binding Protein Rbbp4
Chain: A, C, E, G
Synonym: Chromatin Assembly Factor 1 Subunit C, Caf-1 Subun Omatin Assembly Factor I P48 Subunit, Caf-I 48 Kda Subunit, P48, Nucleosome-Remodeling Factor Subunit Rbap48, Retinobla Inding Protein 4, Rbbp-4, Retinoblastoma-Binding Protein P4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3

Molecule: Metastasis-Associated Protein Mta1
Chain: B, D, F, H
Fragment: Residues 464-546
Synonym: Mta1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3
symmetry Space Group: P 1 21 1
R_factor 0.249 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.294 150.072 95.591 90.00 94.54 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceThe structure of the core NuRD repression complex provides insights into its interaction with chromatin., Millard CJ, Varma N, Saleh A, Morris K, Watson PJ, Bottrill AR, Fairall L, Smith CJ, Schwabe JW, Elife. 2016 Apr 21;5. pii: e13941. doi: 10.7554/eLife.13941. PMID:27098840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (5fxy.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (5fxy.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (5fxy.pdb3.gz) 76 Kb
  • Biological Unit Coordinates (5fxy.pdb4.gz) 75 Kb
  • CSU: Contacts of Structural Units for 5FXY
  • Structure Factors (1969 Kb)
  • Retrieve 5FXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FXY from S2C, [Save to disk]
  • Re-refined 5fxy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FXY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5fxy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fxy_C] [5fxy_H] [5fxy_E] [5fxy_D] [5fxy_G] [5fxy_A] [5fxy_F] [5fxy] [5fxy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FXY: [WD40 ] by SMART
  • Other resources with information on 5FXY
  • Community annotation for 5FXY at PDBWiki (http://pdbwiki.org)

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