5FZO Oxidoreductase date Mar 15, 2016
title Crystal Structure Of The Catalytic Domain Of Human Jmjd1c
authors R.Nowak, R.Talon, T.Krojer, S.Goubin, M.Mcdonough, M.Fairhead, U.O C.Johansson
compound source
Molecule: Probable Jmjc Domain-Containing Histone Demethyla Ein 2c;
Chain: A
Fragment: Jumonji Domain, Unp Residues 2157-2500
Synonym: Jumonji Domain-Containing Protein 1c, Thyroid Rece Interacting Protein 8, Tr-Interacting Protein 8, Trip-8;
Ec: 1.14.11.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Cthf

Molecule: Probable Jmjc Domain-Containing Histone Demethyla Ein 2c;
Chain: B
Fragment: Jumonji Domain, Unp Residues 2157-2500
Synonym: Jumonji Domain-Containing Protein 1c, Thyroid Rece Interacting Protein 8, Tr-Interacting Protein 8, Trip-8;
Ec: 1.14.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Cthf
symmetry Space Group: P 2 21 21
R_factor 0.193 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.320 110.920 165.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand CL, CSD, EDO, MN enzyme Oxidoreductase E.C.1.14.11 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (5fzo.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (5fzo.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 5FZO
  • CSU: Contacts of Structural Units for 5FZO
  • Structure Factors (1266 Kb)
  • Retrieve 5FZO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FZO from S2C, [Save to disk]
  • Re-refined 5fzo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5FZO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5FZO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fzo_A] [5fzo] [5fzo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5FZO: [JmjC ] by SMART
    • Other resources with information on 5FZO
  • Community annotation for 5FZO at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science