5G1X Transferase date Mar 31, 2016
title Crystal Structure Of Aurora-A Kinase In Complex With N-Myc
authors M.W.Richards, S.G.Burgess, R.Bayliss
compound source
Molecule: Aurora Kinase A
Chain: A
Fragment: Kinase Domain, Unp Residues 122-403
Synonym: Aurora 2, Auroraipl1-Related Kinase 1, Ark-1, Aur Related Kinase 1, Hark1, Breast Tumor-Amplified Kinase, Se Threonine-Protein Kinase 15, Serinethreonine-Protein Kina Serine Threonine-Protein Kinase Aurora-A, Aurora-A;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Ril
Expression_system_plasmid: Pet30tev

Molecule: N-Myc Proto-Oncogene Protein
Chain: B
Synonym: Class E Basic Helix-Loop-Helix Protein 37, Bhlhe37
Mutation: Yes
Other_details: N-Terminal Biotin Group

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.1762 R_Free 0.1951
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.520 86.520 92.210 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.72 Å
ligand ADP, MG, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of N-Myc binding by Aurora-A and its destabilization by kinase inhibitors., Richards MW, Burgess SG, Poon E, Carstensen A, Eilers M, Chesler L, Bayliss R, Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13726-13731. Epub 2016 Nov 11. PMID:27837025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (5g1x.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 5G1X
  • CSU: Contacts of Structural Units for 5G1X
  • Structure Factors (2308 Kb)
  • Retrieve 5G1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G1X from S2C, [Save to disk]
  • Re-refined 5g1x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5G1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5G1X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5g1x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g1x_B] [5g1x] [5g1x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5G1X: [S_TKc ] by SMART
  • Other resources with information on 5G1X
  • Community annotation for 5G1X at PDBWiki (http://pdbwiki.org)

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