5G25 Structural Protein date Apr 06, 2016
title Type Iv-Like Pilin Ttha1218 From Thermus Thermophilus
authors V.Karuppiah, J.P.Derrick
compound source
Molecule: Type-Iv Like Competence Pilin Ttha1218
Chain: A
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: T7 Express
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet22b
symmetry Space Group: F 41 3 2
R_factor 0.208 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.590 156.590 156.590 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL enzyme
Primary referenceStructures of type IV pilins from Thermus thermophilus demonstrate similarities with type II secretion system pseudopilins., Karuppiah V, Thistlethwaite A, Derrick JP, J Struct Biol. 2016 Sep 6. pii: S1047-8477(16)30175-7. doi:, 10.1016/j.jsb.2016.08.006. PMID:27612581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (5g25.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 5G25
  • CSU: Contacts of Structural Units for 5G25
  • Structure Factors (65 Kb)
  • Retrieve 5G25 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G25 from S2C, [Save to disk]
  • Re-refined 5g25 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5G25 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5G25
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g25_A] [5g25]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5G25
  • Community annotation for 5G25 at PDBWiki (http://pdbwiki.org)

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