5G2Q Transferase date Apr 12, 2016
title The Crystal Structure Of A S-Selective Transaminase From Arthrobacter Sp. With Alanine Bound
authors N.Van Oosterwijk, S.Willies, J.Hekelaar, A.C.Terwisscha Van Sch N.J.Turner, B.W.Dijkstra
compound source
Molecule: Transaminase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Ec: 2.6.1.-
Engineered: Yes
Other_details: Pyridoxal-5'-Phosphate Covalently Bound Alan
Organism_scientific: Arthrobacter Sp.
Organism_taxid: 1667
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21a
symmetry Space Group: P 1
R_factor 0.1916 R_Free 0.2490
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.278 99.814 217.337 81.58 89.12 74.49
method X-Ray Diffractionresolution 2.30 Å
ligand PDA enzyme Transferase E.C.2.6.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1873 Kb) [Save to disk]
  • Biological Unit Coordinates (5g2q.pdb1.gz) 625 Kb
  • Biological Unit Coordinates (5g2q.pdb2.gz) 637 Kb
  • Biological Unit Coordinates (5g2q.pdb3.gz) 623 Kb
  • LPC: Ligand-Protein Contacts for 5G2Q
  • CSU: Contacts of Structural Units for 5G2Q
  • Structure Factors (3941 Kb)
  • Retrieve 5G2Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G2Q from S2C, [Save to disk]
  • Re-refined 5g2q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5G2Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5G2Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5g2q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g2q_A] [5g2q_D] [5g2q_H] [5g2q_B] [5g2q] [5g2q_J] [5g2q_G] [5g2q_E] [5g2q_L] [5g2q_C] [5g2q_K] [5g2q_F] [5g2q_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5G2Q
  • Community annotation for 5G2Q at PDBWiki (http://pdbwiki.org)

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