5G32	Cell Cycle	date	Apr 18, 2016
title	Structure Of Rad14 In Complex With Acetylaminophenyl-Guanine Containing Dna
authors	N.Simon, C.Ebert, S.Schneider
compound		source
Molecule: Rad14 Chain: A, B Fragment: Residues 188-306 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Rad14, Ymr201c, Ym8325.02c Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693
Molecule: 5'-D(Gpcptpcptpap6fkptpcpaptpcpapcp Chain: C, E		Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: 5'-D(Gptpgpaptpgpapcpgptpapgpapgp)- Chain: D, F		Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 41	R_factor 0.218 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.964 52.964 130.945 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	6FK, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for bulky adduct DNA lesion recognition by the nucleotide excision repair protein Rad14., Schneider S, Simon N, Ebert C, Chemistry. 2016 May 25. doi: 10.1002/chem.201602438. PMID:27223336

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk] Biological Unit Coordinates (5g32.pdb1.gz) 128 Kb LPC: Ligand-Protein Contacts for 5G32 CSU: Contacts of Structural Units for 5G32 Structure Factors (149 Kb) Retrieve 5G32 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5G32 from S2C, [Save to disk] Re-refined 5g32 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5G32 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5G32

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5g32_F] [5g32_C] [5g32_A] [5g32_E] [5g32_B] [5g32_D] [5g32] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5G32

Community annotation for 5G32 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---