5G3M	Hydrolase	date	Apr 29, 2016
title	Discovery Of A Novel Secreted Phospholipase A2 (Spla2) Inhib
authors	J.Sandmark, C.Bodin, K.Hallberg
compound		source
Molecule: Group 10 Secretory Phospholipase A2 Chain: A, B Fragment: Mature Spla2-X, Unp Residues 43-165 Synonym: Secreted Phospholipase A2, Group X Secretory Phosp Spla2-X, Phosphatidylcholine 2-Acylhydrolase 10; Ec: 3.1.1.4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Gold Expression_system_plasmid: Pet24a
symmetry	Space Group: P 21 21 21	R_factor 0.199 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 27.570 85.122 103.316 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	9JH, CA, DMS, PEG	enzyme	Hydrolase E.C.3.1.1.4 BRENDA
Gene Ontology	Chain Function Process Component A, B positive regulation of lipid...
Primary reference	Discovery of AZD2716: A Novel Secreted Phospholipase A2 (sPLA2) Inhibitor for the Treatment of Coronary Artery Disease., Giordanetto F, Pettersen D, Starke I, Nordberg P, Dahlstrom M, Knerr L, Selmi N, Rosengren B, Larsson LO, Sandmark J, Castaldo M, Dekker N, Karlsson U, Hurt-Camejo E, ACS Med Chem Lett. 2016 Aug 9;7(10):884-889. eCollection 2016 Oct 13. PMID:27774123

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (5g3m.pdb1.gz) 24 Kb Biological Unit Coordinates (5g3m.pdb2.gz) 24 Kb LPC: Ligand-Protein Contacts for 5G3M CSU: Contacts of Structural Units for 5G3M Structure Factors (387 Kb) Retrieve 5G3M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5G3M from S2C, [Save to disk] Re-refined 5g3m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5G3M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5G3M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5g3m] [5g3m_A] [5g3m_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5G3M: [PA2c ] by SMART

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