5G4U	Rna Protein	date	May 17, 2016
title	Association Of Three Two-K-Turn Units Based On Kt-7 3bu,3nu, Triangular-Shaped Structure
authors	L.Huang, D.M.J.Lilley
compound		source
Molecule: Hmkt-7 Chain: A, B, E, F, I, J Fragment: Kink Turn Motif Engineered: Yes		Synthetic: Yes Organism_scientific: Haloarcula Marismortui Organism_taxid: 2238
Molecule: 50s Ribosomal Protein L7ae Chain: C, D, G, H, K, L Fragment: K-Turn Binding Domain, Residues 2-119 Synonym: Ribosomal Protein L8e Engineered: Yes		Organism_scientific: Archaeoglobus Fulgidus Organism_taxid: 2234 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Gold Plyss
symmetry	Space Group: P 21 21 21	R_factor 0.229 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 261.260 69.220 85.350 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.65 Å
Gene Ontology	Chain Function Process Component H, D, C, K, G, L ribonuclease P activity
Primary reference	A quasi-cyclic RNA nano-scale molecular object constructed using kink turns., Huang L, Lilley DM, Nanoscale. 2016 Aug 18;8(33):15189-95. doi: 10.1039/c6nr05186c. PMID:27506301

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (349 Kb) [Save to disk] Biological Unit Coordinates (5g4u.pdb1.gz) 113 Kb Biological Unit Coordinates (5g4u.pdb2.gz) 113 Kb Biological Unit Coordinates (5g4u.pdb3.gz) 112 Kb CSU: Contacts of Structural Units for 5G4U Structure Factors (2393 Kb) Retrieve 5G4U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5G4U from S2C, [Save to disk] Re-refined 5g4u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5G4U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5G4U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5g4u] [5g4u_F] [5g4u_B] [5g4u_I] [5g4u_G] [5g4u_E] [5g4u_A] [5g4u_L] [5g4u_H] [5g4u_J] [5g4u_K] [5g4u_C] [5g4u_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5G4U

Community annotation for 5G4U at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---