5G58 Calcium Binding Protein date May 22, 2016
title Crystal Structure Of A190t Mutant Of Human Hippocalcin At 2. Resolution
authors S.V.Antonyuk, N.Helassa, L.Y.Lian, L.P.Haynes, R.D.Burgoyne
compound source
Molecule: Neuron-Specific Calcium-Binding Protein Hippocalc
Chain: A, E
Synonym: Calcium-Binding Protein Bdr-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hpca, Bdr2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pe-Sumo
symmetry Space Group: P 61
R_factor 0.215 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.660 50.660 283.460 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.54 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


Primary referenceBiophysical and functional characterization of hippocalcin mutants responsible for human dystonia., Helassa N, Antonyuk SV, Lian LY, Haynes LP, Burgoyne RD, Hum Mol Genet. 2017 Apr 7. doi: 10.1093/hmg/ddx133. PMID:28398555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (5g58.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (5g58.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5G58
  • CSU: Contacts of Structural Units for 5G58
  • Structure Factors (108 Kb)
  • Retrieve 5G58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G58 from S2C, [Save to disk]
  • Re-refined 5g58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5G58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5G58
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g58] [5g58_E] [5g58_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5G58
  • Community annotation for 5G58 at PDBWiki (http://pdbwiki.org)

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