5G59 Structural Protein date May 23, 2016
title Structure Of The Pyrococcus Furiosus Esterase Pf2001 With Sp P3121
authors N.Varejao, D.Reverter
compound source
Molecule: Esterase
Chain: A
Fragment: Unp Residues 21-288
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 31 2 1
R_factor 0.167 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.334 105.334 47.843 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.61 Å
ligand HG enzyme
Primary referenceStructural Mechanism for the Temperature-Dependent Activation of the Hyperthermophilic Pf2001 Esterase., Varejao N, De-Andrade RA, Almeida RV, Anobom CD, Foguel D, Reverter D, Structure. 2017 Dec 28. pii: S0969-2126(17)30403-3. doi:, 10.1016/j.str.2017.12.004. PMID:29307486
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (5g59.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 5G59
  • CSU: Contacts of Structural Units for 5G59
  • Structure Factors (2140 Kb)
  • Retrieve 5G59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G59 from S2C, [Save to disk]
  • Re-refined 5g59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5G59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5G59
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g59_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5G59
  • Community annotation for 5G59 at PDBWiki (http://pdbwiki.org)

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