5G5D Carbohydrate Binding Protein date May 23, 2016
title Crystal Structure Of The Cohscac2-Xdoccipa Type II Complex F Clostridium Thermocellum
authors A.L.Carvalho, J.L.A Bras, S.H.Najmudin, B.A.Pinheiro, C.M.G.A.Fo
compound source
Molecule: Cellulosome Anchoring Protein Cohesin Region
Chain: A
Fragment: Second Cohesin Domain
Engineered: Yes
Organism_scientific: Ruminiclostridium Thermocellum Ad2
Organism_taxid: 1138384
Atcc: 27405
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28

Molecule: Cellulosomal-Scaffolding Protein A
Chain: B
Fragment: Dockerin Domain
Synonym: Cellulose-Integrating Protein A, Cellulosomal Glyc S1sl, Cohesin;
Engineered: Yes

Organism_scientific: Clostridium Thermocellum
Organism_taxid: 203119
Atcc: 27405
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet28
symmetry Space Group: I 2 2 2
R_factor 0.256 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.360 125.805 130.467 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDiverse specificity of cellulosome attachment to the bacterial cell surface., Bras JL, Pinheiro BA, Cameron K, Cuskin F, Viegas A, Najmudin S, Bule P, Pires VM, Romao MJ, Bayer EA, Spencer HL, Smith S, Gilbert HJ, Alves VD, Carvalho AL, Fontes CM, Sci Rep. 2016 Dec 7;6:38292. doi: 10.1038/srep38292. PMID:27924829
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (5g5d.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (5g5d.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5G5D
  • CSU: Contacts of Structural Units for 5G5D
  • Structure Factors (527 Kb)
  • Retrieve 5G5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G5D from S2C, [Save to disk]
  • Re-refined 5g5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5G5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5G5D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g5d_A] [5g5d] [5g5d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5G5D
  • Community annotation for 5G5D at PDBWiki (http://pdbwiki.org)

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