5GAD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GNP, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R
  • translation repressor activi...


    • S


    T


    U


    V


    W


    X


    Y


    Z


    a


    b


    c


    d


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    f


    i


    l


    Primary referenceStructures of the E. coli translating ribosome with SRP and its receptor and with the translocon., Jomaa A, Boehringer D, Leibundgut M, Ban N, Nat Commun. 2016 Jan 25;7:10471. doi: 10.1038/ncomms10471. PMID:26804923
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1642 Kb) [Save to disk]
  • Biological Unit Coordinates (5gad.pdb1.gz) 1624 Kb
  • LPC: Ligand-Protein Contacts for 5GAD
  • CSU: Contacts of Structural Units for 5GAD
  • Retrieve 5GAD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GAD from S2C, [Save to disk]
    • View 5GAD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gad_I] [5gad_J] [5gad] [5gad_1] [5gad_2] [5gad_A] [5gad_B] [5gad_C] [5gad_D] [5gad_E] [5gad_F] [5gad_G] [5gad_H] [5gad_K] [5gad_L] [5gad_M] [5gad_N] [5gad_O] [5gad_P] [5gad_Q] [5gad_R] [5gad_S] [5gad_T] [5gad_U] [5gad_V] [5gad_W] [5gad_X] [5gad_Y] [5gad_Z] [5gad_a] [5gad_b] [5gad_c] [5gad_d] [5gad_e] [5gad_f] [5gad_i] [5gad_k] [5gad_l]
  • SWISS-PROT database:
  • Domains found in 5GAD: [AAA] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [SRP54] [SRP54_N ] by SMART

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