5GAP Transcription date Dec 15, 2015
title Body Region Of The U4u6.U5 Tri-Snrnp
authors T.H.D.Nguyen, W.P.Galej, C.Oubridge, X.C.Bai, A.Newman, S.Scheres
compound source
Molecule: U4 Snrna, 5' Region, Nucleotides 1-67
Chain: V
Other_details: U4 Snrna 5' Region, Nucleotides 1-67.
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: U6 Snrna
Chain: W
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: U5 Snrna
Chain: U
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Unknown Protein
Chain: x
Other_details: Clear Helical Regions Were Built As Poly(Ala Could Not Be Assigned To A Specific Protein.;
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Pre-Mrna-Splicing Factor 8
Chain: A
Synonym: Prp8
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: U4u6 Small Nuclear Ribonucleoprotein Prp4
Chain: H
Synonym: Pre-Mrna-Processing Protein 4, Prp4
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Pre-Mrna-Splicing Factor 6
Chain: J
Synonym: Prp6
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Spliceosomal Protein Dib1
Chain: D
Synonym: Dib1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Pre-Mrna-Processing Factor 31
Chain: F
Synonym: Prp31
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: U4u6 Small Nuclear Ribonucleoprotein Prp3
Chain: G
Synonym: Pre-Mrna-Splicing Factor 3, Prp3
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 13 Kda Ribonucleoprotein-Associated Protein
Chain: K
Synonym: Small Nuclear Ribonucleoprotein-Associated Protein
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Pre-Mrna-Splicing Helicase Brr2
Chain: B
Synonym: Protein Snu246
Ec: 3.6.4.13
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand
enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • metallopeptidase activity


    • B


    D


    F


    G


    H


    J


    K


    Primary referenceCryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 A resolution., Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K, Nature. 2016 Feb 18;530(7590):298-302. doi: 10.1038/nature16940. Epub 2016 Feb 1. PMID:26829225
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (670 Kb) [Save to disk]
  • Biological Unit Coordinates (5gap.pdb1.gz) 647 Kb
  • CSU: Contacts of Structural Units for 5GAP
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  • View one-letter amino acid or nucleotide sequence for each chain: [5gap] [5gap_J] [5gap_x] [5gap_D] [5gap_W] [5gap_G] [5gap_K] [5gap_V] [5gap_H] [5gap_A] [5gap_F] [5gap_U] [5gap_B]
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