5GJQ Hydrolase date Jul 01, 2016
title Structure Of The Human 26s Proteasome Bound To Usp14-Ubal
authors X.L.Huang, B.Luan, J.P.Wu, Y.G.Shi
compound source
Molecule: Proteasome Subunit Beta Type-6
Chain: a, o
Synonym: Macropain Delta Chain,Multicatalytic Endopeptidase Delta Chain,Proteasome Delta Chain,Proteasome Subunit Y;
Ec: 3.4.25.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-6
Chain: B, h
Synonym: 27 Kda Prosomal Protein,P27k,Macropain Iota Chain, Multicatalytic Endopeptidase Complex Iota Chain,Proteasome Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-7
Chain: b, p
Synonym: Macropain Chain Z,Multicatalytic Endopeptidase Com Z,Proteasome Subunit Z;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-2
Chain: C, I
Synonym: Macropain Subunit C3,Multicatalytic Endopeptidase Subunit C3,Proteasome Component C3;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-3
Chain: c, q
Synonym: Proteasome Chain 13,Proteasome Component C10-II,Pr Theta Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-4
Chain: D, j
Synonym: Macropain Subunit C9,Multicatalytic Endopeptidase Subunit C9,Proteasome Component C9,Proteasome Subunit L;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-2
Chain: d, r
Synonym: Macropain Subunit C7-I,Multicatalytic Endopeptidas Subunit C7-I,Proteasome Component C7-I;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-7
Chain: E, k
Synonym: Proteasome Subunit Rc6-1,Proteasome Subunit Xapc7
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-5
Chain: e, s
Synonym: Macropain Epsilon Chain,Multicatalytic Endopeptida Epsilon Chain,Proteasome Chain 6,Proteasome Epsilon Chain,P Subunit Mb1,Proteasome Subunit X;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-5
Chain: F, l
Synonym: Macropain Zeta Chain,Multicatalytic Endopeptidase Zeta Chain,Proteasome Zeta Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-1
Chain: f, t
Synonym: Macropain Subunit C5,Multicatalytic Endopeptidase Subunit C5,Proteasome Component C5,Proteasome Gamma Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-1
Chain: G, m
Synonym: 30 Kda Prosomal Protein,Pros-30,Macropain Subunit Multicatalytic Endopeptidase Complex Subunit C2,Proteasome C2,Proteasome Nu Chain;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Beta Type-4
Chain: g, u
Synonym: 26 Kda Prosomal Protein,Pros-26,Macropain Beta Cha Multicatalytic Endopeptidase Complex Beta Chain,Proteasome Chain,Proteasome Chain 3,Hsn3;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 7
Chain: H
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt1,Proteasome Subunit Atpase 2,Protein Mss1;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 4
Chain: I
Synonym: P26s4,26s Proteasome Aaa-Atpase Subunit Rpt2,Prote Subunit Atpase 1;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 8
Chain: J
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt6,Proteasome Subunit Atpase 5,Proteasome Subunit P45,Thyroid Hormone Rec Interacting Protein 1,Trip1,P45sug;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 6b
Chain: K
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt3,Mb67-Intera Protein,Mip224,Proteasome 26s Subunit Atpase 4,Tat-Binding Tbp-7;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 10b
Chain: L
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt4,Proteasome Subunit Atpase 6,Proteasome Subunit P42;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Protease Regulatory Subunit 6a
Chain: M
Synonym: 26s Proteasome Aaa-Atpase Subunit Rpt5,Proteasome Subunit Atpase 3,Proteasome Subunit P50,Tat-Binding Protein

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 1
Chain: N
Synonym: 26s Proteasome Regulatory Subunit Rpn2,26s Proteas Regulatory Subunit S1,26s Proteasome Subunit P112;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Proteasome Subunit Alpha Type-3
Chain: n, X
Synonym: Macropain Subunit C8,Multicatalytic Endopeptidase Subunit C8,Proteasome Component C8;
Ec: 3.4.25.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 13
Chain: O
Synonym: 26s Proteasome Regulatory Subunit Rpn9,26s Proteas Regulatory Subunit S11,26s Proteasome Regulatory Subunit P4

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 12
Chain: P
Synonym: 26s Proteasome Regulatory Subunit Rpn5,26s Proteas Regulatory Subunit P55;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 11
Chain: Q
Synonym: 26s Proteasome Regulatory Subunit Rpn6,26s Proteas Regulatory Subunit S9,26s Proteasome Regulatory Subunit P44

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 6
Chain: R
Synonym: 26s Proteasome Regulatory Subunit Rpn7,26s Proteas Regulatory Subunit S10,Breast Cancer-Associated Protein Sga Phosphonoformate Immuno-Associated Protein 4,Proteasome Reg Particle Subunit P44s10,P42a;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 3
Chain: S
Synonym: 26s Proteasome Regulatory Subunit Rpn3,26s Proteas Regulatory Subunit S3,Proteasome Subunit P58;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 8
Chain: T
Synonym: 26s Proteasome Regulatory Subunit Rpn12,26s Protea Regulatory Subunit S14,P31;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 7
Chain: U
Synonym: 26s Proteasome Regulatory Subunit Rpn8,26s Proteas Regulatory Subunit S12,Mov34 Protein Homolog,Proteasome Sub

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 14
Chain: V
Synonym: 26s Proteasome Regulatory Subunit Rpn11,26s Protea Associated Pad1 Homolog 1;
Ec: 3.4.19.-

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 4
Chain: W
Synonym: 26s Proteasome Regulatory Subunit Rpn10,26s Protea Regulatory Subunit S5a,Antisecretory Factor 1,Asf,Multiubiq Chain-Binding Protein;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Complex Subunit Dss1
Chain: Y
Synonym: Deleted In Split Handsplit Foot Protein 1,Split H Deleted Protein 1,Split Handfoot Malformation Type 1 Prote

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 26s Proteasome Non-Atpase Regulatory Subunit 2
Chain: Z
Synonym: 26s Proteasome Regulatory Subunit Rpn1,26s Proteas Regulatory Subunit S2,26s Proteasome Subunit P97,Protein 55 Necrosis Factor Type 1 Receptor-Associated Protein 2;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 14
Chain: x
Synonym: Deubiquitinating Enzyme 14,Ubiquitin Thioesterase Ubiquitin-Specific-Processing Protease 14;
Ec: 3.4.19.12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp14, Tgt
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_strain: K-12

Molecule: Polyubiquitin-B
Chain: y
Fragment: Unp Residues 1-76
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.50 Å
ligand ADP, GLZ enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B, h
  • positive regulation of NF-ka...

  • C, i


    E, k


    F, l


    G, m


    H
  • proteasome-activating ATPase...


  • I
  • proteasome-activating ATPase...


  • J


    K
  • proteasome-activating ATPase...


  • L

  • proteasome complex
  • M


    N
  • enzyme regulator activity


  • O


    P


    Q


    R
  • enzyme regulator activity


  • S
  • enzyme regulator activity


  • T


    U


    V
  • endopeptidase activator acti...


  • W


    Y


    Z
  • enzyme regulator activity


  • a, o


    b, p


    c, q


    d, r


    e, s


    j, D


    n, X


    t, f


    u, g


    x
  • endopeptidase inhibitor acti...


  • Primary referenceAn atomic structure of the human 26S proteasome., Huang X, Luan B, Wu J, Shi Y, Nat Struct Mol Biol. 2016 Jul 18. doi: 10.1038/nsmb.3273. PMID:27428775
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2058 Kb) [Save to disk]
  • Biological Unit Coordinates (5gjq.pdb1.gz) 2021 Kb
  • LPC: Ligand-Protein Contacts for 5GJQ
  • CSU: Contacts of Structural Units for 5GJQ
  • Retrieve 5GJQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GJQ from S2C, [Save to disk]
  • View 5GJQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GJQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5gjq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gjq_E] [5gjq_r] [5gjq_T] [5gjq_M] [5gjq_N] [5gjq_g] [5gjq_x] [5gjq_h] [5gjq_n] [5gjq_f] [5gjq_Y] [5gjq_F] [5gjq_Q] [5gjq_R] [5gjq_d] [5gjq_U] [5gjq_D] [5gjq_p] [5gjq_S] [5gjq_J] [5gjq_s] [5gjq_G] [5gjq_W] [5gjq_O] [5gjq_c] [5gjq_I] [5gjq_P] [5gjq_o] [5gjq_C] [5gjq_l] [5gjq_m] [5gjq_a] [5gjq_e] [5gjq_X] [5gjq_t] [5gjq] [5gjq_B] [5gjq_V] [5gjq_Z] [5gjq_K] [5gjq_q] [5gjq_H] [5gjq_i] [5gjq_j] [5gjq_k] [5gjq_y] [5gjq_u] [5gjq_L] [5gjq_b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5GJQ: [AAA] [DSS1_SEM1] [JAB_MPN] [PAM] [PINT] [Proteasome_A_N] [UBQ] [UIM] [VWA ] by SMART
  • Other resources with information on 5GJQ
  • Community annotation for 5GJQ at PDBWiki (http://pdbwiki.org)

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