5GMP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand F62 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA structure-guided optimization of pyrido[2,3-d]pyrimidin-7-ones as selective inhibitors of EGFRL858R/T790M mutant with improved pharmacokinetic properties., Yu L, Huang M, Xu T, Tong L, Yan XE, Zhang Z, Xu Y, Yun C, Xie H, Ding K, Lu X, Eur J Med Chem. 2017 Jan 27;126:1107-1117. doi: 10.1016/j.ejmech.2016.12.006., Epub 2016 Dec 3. PMID:28033579
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5gmp.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 5GMP
  • CSU: Contacts of Structural Units for 5GMP
  • Structure Factors (154 Kb)
  • Retrieve 5GMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GMP from S2C, [Save to disk]
  • Re-refined 5gmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gmp_A]
  • SWISS-PROT database:

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