5GOE Hydrolase date Jul 26, 2016
title Truncated Mitofusin-1, Gdp-Bound
authors Y.L.Cao, S.Gao
compound source
Molecule: Mitofusin-1
Chain: A
Fragment: Unp Residues 696-741
Synonym: Fzo Homolog,Transmembrane Gtpase Mfn1,Fzo Homolog, Transmembrane Gtpase Mfn1;
Ec: 3.6.5.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mfn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.420 72.910 94.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GDP enzyme Hydrolase E.C.3.6.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMFN1 structures reveal nucleotide-triggered dimerization critical for mitochondrial fusion., Cao YL, Meng S, Chen Y, Feng JX, Gu DD, Yu B, Li YJ, Yang JY, Liao S, Chan DC, Gao S, Nature. 2017 Feb 16;542(7641):372-376. doi: 10.1038/nature21077. Epub 2017 Jan, 23. PMID:28114303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5goe.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 5GOE
  • CSU: Contacts of Structural Units for 5GOE
  • Structure Factors (737 Kb)
  • Retrieve 5GOE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GOE from S2C, [Save to disk]
  • Re-refined 5goe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GOE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GOE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5goe] [5goe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GOE
  • Community annotation for 5GOE at PDBWiki (http://pdbwiki.org)

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