5GOW Transcription date Jul 29, 2016
title Solution Structure Of The Complex Between Dp1 Acidic Region P62 Ph Domain
authors M.Okuda, Y.Nishimura
compound source
Molecule: Dp1
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 1
Chain: B
Fragment: Unp Residues 1-108
Synonym: Basic Transcription Factor 2 62 Kda Subunit,Btf2 P Transcription Factor Iih Polypeptide 1,Tfiih Basal Transcri Factor Complex P62 Subunit;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2h1, Btf2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR

Primary referenceThe Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH., Okuda M, Araki K, Ohtani K, Nishimura Y, J Mol Biol. 2016 Dec 4;428(24 Pt B):4993-5006. doi: 10.1016/j.jmb.2016.11.001., Epub 2016 Nov 5. PMID:27825926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (678 Kb) [Save to disk]
  • Biological Unit Coordinates (5gow.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 5GOW
  • Original NMR restraints for 5GOW from PDB
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  • SEQRES to COORDINATES correlation for 5GOW from S2C, [Save to disk]
  • View 5GOW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GOW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gow_A] [5gow] [5gow_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GOW
  • Community annotation for 5GOW at PDBWiki (http://pdbwiki.org)

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