5GPG	Isomerase Transferase	date	Aug 02, 2016
title	Co-Crystal Structure Of The Fk506 Binding Domain Of Human Fk Rapamycin And The Frb Domain Of Human Mtor
authors	H.B.Lee, S.Y.Lee, H.W.Rhee, C.W.Lee
compound		source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Fkbp3 Chain: A Fragment: Unp Residues 109-224 Synonym: Ppiase Fkbp3,25 Kda Fk506-Binding Protein,Fkbp-25, Binding Protein 3,Fkbp-3,Immunophilin Fkbp25,Rapamycin-Sele Kda Immunophilin,Rotamase; Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fkbp3, Fkbp25 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Serinethreonine-Protein Kinase Mtor Chain: B Fragment: Unp Residues 2021-2112 Synonym: Fk506-Binding Protein 12-Rapamycin Complex-Associa Protein 1,Fkbp12-Rapamycin Complex-Associated Protein,Mamma Target Of Rapamycin,Mtor,Mechanistic Target Of Rapamycin,Ra And Fkbp12 Target 1,Rapamycin Target Protein 1; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mtor, Frap, Frap1, Frap2, Raft1, Rapt1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 21 21 21	R_factor 0.174 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.038 58.352 86.502 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.67 Å
ligand	CAS, RAP	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (5gpg.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 5GPG CSU: Contacts of Structural Units for 5GPG Structure Factors (452 Kb) Retrieve 5GPG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GPG from S2C, [Save to disk] Re-refined 5gpg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GPG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GPG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gpg_B] [5gpg] [5gpg_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5GPG: [Rapamycin_bind ] by SMART

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