5GPY Transcription date Aug 05, 2016
title Crystal Structure Of The Human Tfiie Complex
authors T.Obita, K.Miwa, R.Kojima, Y.Ohkuma, Y.Tamura, M.Mizuguchi
compound source
Molecule: General Transcription Factor Iie Subunit 1
Chain: A
Fragment: Unp Residues 1-217
Synonym: General Transcription Factor Iie 56 Kda Subunit, Transcription Initiation Factor Iie Subunit Alpha,Tfiie-Alp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2e1, Tf2e1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Initiation Factor Iie Subunit Beta
Chain: B
Fragment: Unp Residues 141-244
Synonym: Tfiie-Beta,General Transcription Factor Iie Subuni
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2e2, Tf2e2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.520 69.200 116.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal Structure of Human General Transcription Factor TFIIE at Atomic Resolution., Miwa K, Kojima R, Obita T, Ohkuma Y, Tamura Y, Mizuguchi M, J Mol Biol. 2016 Oct 23;428(21):4258-4266. doi: 10.1016/j.jmb.2016.09.008. Epub, 2016 Sep 15. PMID:27639436
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (5gpy.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 5GPY
  • CSU: Contacts of Structural Units for 5GPY
  • Structure Factors (1616 Kb)
  • Retrieve 5GPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GPY from S2C, [Save to disk]
  • Re-refined 5gpy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GPY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5gpy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gpy] [5gpy_B] [5gpy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5GPY: [TFIIE ] by SMART
  • Other resources with information on 5GPY
  • Community annotation for 5GPY at PDBWiki (http://pdbwiki.org)

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