5GRN Transferase Transferase Inhibitor date Aug 11, 2016
title Crystal Structure Of Pdgfra In Complex With Wq-C-159
authors X.E.Yan, C.H.Yun
compound source
Molecule: Platelet-Derived Growth Factor Receptor Alpha
Chain: A
Fragment: Unp Residues 550-696 And 769-973
Synonym: Pdgfr-Alpha,Alpha Platelet-Derived Growth Factor R Alpha-Type Platelet-Derived Growth Factor Receptor,Cd140 An Family Member A,Cd140a Antigen,Platelet-Derived Growth Fact Receptor,Platelet-Derived Growth Factor Receptor 2,Pdgfr-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdgfra, Pdgfr2, Rhepdgfra
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.157 R_Free 0.179
length a length b length c angle alpha angle beta angle gamma
48.776 49.372 108.696 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.77 Å
enzyme Transferase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (5grn.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 5GRN
  • Structure Factors (315 Kb)
  • Retrieve 5GRN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GRN from S2C, [Save to disk]
  • View 5GRN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GRN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5grn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5grn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GRN
  • Community annotation for 5GRN at PDBWiki (http://pdbwiki.org)

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